Publications- (Last updated: AUGUST 21, 2007)

1. P. G. Wolynes, “Bounds for Convective Contributions to Transport Coefficients,“ Phys. Rev. A 11(5):1700-1705, (1975).

2. P. G. Wolynes, “Hydrodynamic Boundary Conditions and Mode-Mode Coupling Theory,” Phys. Rev. A 13(3):1235-1250, (1976).

3. P. G. Wolynes, “Osmotic Effects Near the Critical Point,” J. Phys. Chem. 80:1570-1572, (1976).

4. P. G. Wolynes and J. M. Deutch, “Slip Boundary Conditions and the Hydrodynamic Effect on Diffusion Controlled Reactions,” J. Chem. Phys. 65(1):450-454, (1976).

5. P. G. Wolynes and J. M. Deutch, “Hydrodynamic Boundary Conditions and Polymer Dynamics,” J. Chem. Phys. 65:2030-2031, (1976).

6. J. A. McCammon, B. R. Gelin, M. Karplus and P. G. Wolynes, “The Hinge-Bending Mode of Lysozyme,” Nature 262(5566):325-326, (1976).

7. P. G. Wolynes and J. A. McCammon, “Hydrodynamic Effect on the Coagulation of Porous Biopolymers,” Macromolecules 10:86-87, (1977).

8. J. A. McCammon and P. G. Wolynes, “Nonsteady Hydrodynamics of Biopolymer Motions,” J. Chem. Phys. 66(4):1452-1456, (1977).

9. P. G. Wolynes and J. M. Deutch, “Dynamical Orientation Correlations in Solution,” J. Chem. Phys. 67(2):733-741, (1977).

10. J. A. Montgomery, Jr., B. J. Berne, P. G. Wolynes, and J. M. Deutch, “On the Effects of Translation-Rotation Coupling on Hydrodynamic Diffusion Tensors,” J. Chem. Phys. 67(12):5971-5972 (1977).

11. P. G. Wolynes, “Molecular Theory of Solvated Ion Dynamics,” J. Chem. Phys. 68(2):473-483, (1978).

12. P. G. Wolynes and R. E. Roberts, “Molecular Interpretation of the Infrared Water Vapor Continuum,” Applied Optics 17(10):1484-1485, (1978).

13. K. Schulten and P. G. Wolynes, “Semiclassical Description of Electron Spin Motion in Radicals Including the Effect of Electron Hopping,” J. Chem. Phys. 68(7):3292-3297, (1978).

14. J. B. Hubbard and P. G. Wolynes, “Dielectric Friction and Molecular Reorientation,” J. Chem. Phys. 69(3):998-1006, (1978).

15. J. L. Skinner and P. G. Wolynes, “Relaxation Processes and Chemical Kinetics,” J. Chem. Phys. 69(5):2143-2150, (1978).

16. J. A. McCammon, P. G. Wolynes and M. Karplus, “Picosecond Dynamics of Tyrosine Side Chains in Proteins,” Biochemistry 18:927-942, (1979).

17. D. F. Evans, T. Tominaga, J. B. Hubbard, and P. G. Wolynes, “Ionic Mobility: Theory Meets Experiment,” J. Phys. Chem. 83(20):2669-2677, (1979).

18. J. L. Skinner and P. G. Wolynes, “Derivation of Smoluchowski Equations with Corrections for Fokker-Planck and BGK Collision Models,” Physica A 96A:561-572, (1979).

19. P. Colonomos and P. G. Wolynes, “Molecular Theory of Solvated Ion Dynamics II: Fluid Structure and Ionic Mobilities,” J. Chem. Phys. 71(6):2644-2651, (1979).

20. J. B. Hubbard, P. Colonomos and P. G. Wolynes, “Molecular Theory of Solvated Ion Dynamics III: The Kinetic Dielectric Decrement,” J. Chem. Phys. 71(6):2652-2661, (1979).

21. P. G. Wolynes (translated by T. Fujiyama), “What's Simple About Complex Fluids?,” Kagaku no Ryoiki (Journal of Japanese Chemistry) 33:897-905, (1979).

22. D. F. Calef and P. G. Wolynes, “Flow Birefringence and Hydrodynamic Boundary Conditions,” J. Chem. Phys. 72(1):535-540, (1980).

23. J. L. Skinner and P. G. Wolynes, “General Kinetic Models of Activated Processes in Condensed Phases,” J. Chem. Phys. 72(9):4913-4927, (1980).

24. P. G. Wolynes, “Dynamics of Electrolyte Solutions,” Ann. Rev. Phys. Chem. 31:345-376, (1980).

25. J. L. Skinner and P. G. Wolynes, “Transition State and Brownian Motion Theories of Solitons,” J. Chem. Phys. 73(8):4015-1021, (1980).

26. J. L. Skinner and P. G. Wolynes, “Solitons, Defect Diffusion, and Dielectric Relaxation of Polymers,” J. Chem. Phys. 73(8):4022-4025, (1980).

27. B. J. Berne, J. L. Skinner and P. G. Wolynes, “Impulsive Stochastic Models of Molecular Relaxation and Isomerization Reactions,” J. Chem. Phys. 73(9):4314-4320, (1980).

28. D. Chandler and P. G. Wolynes, “Exploiting the Isomorphism Between Quantum Theory and Classical Statistical Mechanics of Polyatomic Fluids,” J. Chem. Phys. 74(7):4078-4095, (1981).

29. J. T. Hynes and P. G. Wolynes, “A Continuum Theory for Quadrupole Relaxation of Ions in Solution,” J. Chem. Phys. 75(1):395-401, (1981).

30. K. Schweizer, R. Stratt, D. Chandler and P. G. Wolynes, “Convenient and Accurate Discretized Path Integral Methods for Equilibrium Quantum Mechanical Calculations,” J. Chem. Phys. 75(3):1347-1364, (1981).

31. P. G. Wolynes, “Quantum Theory of Activated Events in Condensed Phases,” Phys. Rev. Lett. 47(13):968-971, (1981).

32. J. B. Hubbard and P. G. Wolynes, “An Electrohydrodynamic Contribution to the Hall Effect in Electrolyte Solutions, “ J. Chem. Phys. 75(6):3051-3054, (1981).

33. R. M. Levy, M. Karplus and P. G. Wolynes, “NMR Relaxation Parameters in Molecules with Internal Motion: Exact Langevin Trajectory Results Compared with Simplified Relaxation Models,” J. Am. Chem. Soc. 103:5998-6011, (1981).

34. P. G. Wolynes, Book Review: “Functional Integration: Theory and Applications,” J. Stat. Phys. 28:409, (1982).

35. P. G. Wolynes, “Quantum Statistical Mechanics of Solvation,” in Ions and Molecules in Solution, H. Ohtakhi, Editor (Elsevier Press, 1983).

36. D. F. Calef and P. G. Wolynes, “Classical Solvent Dynamics and Electron Transfer I. Continuum Theory,” J. Phys. Chem. 87(18):3387-3400, (1983).

37. D. Chandler, K. S. Schweizer and P. G. Wolynes, “Electronic States of a Topologically Disordered System: Exact Solution of the Mean Spherical Model for Liquids,” Phys. Rev. Lett. 49(15):1100-1103, (1982).

38. D. Calef and P. G. Wolynes, “Smoluchowski-Vlasov Theory of Charge Solvation Dynamics,” J. Chem. Phys. 78(6);4145-4153, (1983).

39. D. F. Calef and P. G. Wolynes, “Classical Solvent Dynamics and Electron Transfer II. Molecular Aspects,” J. Chem. Phys. 78(1):470-482, (1983).

40. G. A. Jongeward and P. G. Wolynes, “Renormalization Group Studies of Tunneling Systems in the Condensed Phase,” J. Chem. Phys. 79(7):3517-3528, (1983).

41. E. C. Behrman, G. A. Jongeward and P. G. Wolynes, “A Monte Carlo Approach for the Real Time Dynamics of Tunneling Systems in Condensed Phases,” J. Chem. Phys. 79(12):6277-6281, (1983).

42. P. G. Wolynes, “Chemical Physics of Molecular Systems in Condensed Phases,” in Monte Carlo Methods in Quantum Problems, M. H. Kalos, Editor (Dordrecht, 1984).

43. D. E. Logan and P. G. Wolynes, “Self-Consistent Theory of Localization in Topologically Disordered Systems,” Phys. Rev. B 29(12):6560-6562, (1984).

44. R. A. Chiles, G. A. Jongeward, M. A. Bolton and P. G. Wolynes, “A Monte Carlo Approach to Chemical Bonding in Condensed Phases,” J. Chem. Phys. 81(4):2039-2046, (1984).

45. J. P. Stoessel and P. G. Wolynes, “Linear Excitations and the Stability of the Hard Sphere Glass,” J. Chem. Phys. 80(9):4502-4512, (1984).

46. H. Frauenfelder and P. G. Wolynes, “Rate Theories and Puzzles of Hemeprotein Kinetics,” Science 229(4711):337-345, (1985).

47. J. B. Hubbard and P. G. Wolynes, “Theories of Solvated Ion Dynamics,” in The Chemical Physics of Solvation, R. R. Dogonadze, E. Kalman, A. A. Kornyshev, and J. Ulstrup, Editors (Elsevier, 1987) p. 33-112.

48. D. E. Logan and P. G. Wolynes, “Anderson Localization in Topologically Disordered Systems,” Phys. Rev. B 31(4):2437-2450, (1985).

49. Y. Singh, J. P. Stoessel and P. G. Wolynes, “Hard-Sphere Glass and the Density-Functional Theory of Aperiodic Crystals ,” Phys. Rev . Lett. 54(10):1059-1062, (1985).

50. K. J. Wahlstrand and P. G. Wolynes, “Simulation of a Relativistic Soliton Model of Crystalline Polymer Dynamics,” J. Chem. Phys. 82(11):5259-5263, (1985).

51. E. C. Behrman, G. A. Jongeward and P. G. Wolynes, “An Optimized Random Phase Approximation for the Dynamics of Tunneling Systems in Condensed Phases,” J. Chem. Phys. 83(2):668-673, (1985).

52. R. W. Hall and P. G. Wolynes, “Solvent Influence on Atomic Spectra: The Effect of Finite Size,” J. Chem. Phys. 83(7):3214-3221, (1985).

53. P. G. Wolynes, “Microscopic Theory of Aperiodic Crystals : Approaches for the Hard Sphere Glass Transition,” J. Non-Crystalline Solids 75:443-448, (1985).

54. K. Cooper, E. Jakobsson and P. G. Wolynes, “The Theory of Ion Transport through Membrane Channels,” Progr. in Biophys. and Mol. Biol. 46:51-96, (1985).

55. E. C. Behrman and P. G. Wolynes, “Dynamics of a Two-Level System Coupled to a Dissipative Bath : Comparisons of Analytical Theories with Monte Carlo Simulation,” J. Chem. Phys. 83(11):5863-5869, (1985).

56. P. G. Wolynes, “Dissipation, Tunneling and Adiabaticity Criteria for Curve Crossing Problems in the Condensed Phase,” J. Chem. Phys. 86(4):1957-1966, (1987).

57. R. W. Hall and P. G. Wolynes, “Quantum Monte Carlo Study of a Lattice-Atom Model for Excitonic Fluids,” Phys. Rev. B 33(11):7879-7881, (1986).

58. D. E. Logan and P. G. Wolynes, “ Anderson Localization in Topologically Disordered Systems: The Effects of Band Structure,” J. Chem. Phys. 85(2):937-948, (1986).

59. R. W. Hall and P. G. Wolynes, “G. N. Lewis' Atom and Quantum Monte Carlo Studies of Liquids,” J. Stat. Phys. (Festschrift for N. Metropolis) 43(5,6):935-948, (1986).

60. P. G. Wolynes, “Adiabaticity Criteria in Biomolecular Reactions,” in Proc. In Life Sciences Protein Structure on Molecular and Electronic Reactivity, R. Austin, et al., Editors (Springer-Verlag, 1987).

61. P. G. Wolynes, “Computational Hurdles in Chemistry--Classical Simulations, Quantum Simulations, and Beyond,” in High-Speed Computing: Scientific Applications and Algorithm Design, R. Wilhelmson, Editor (U.I. Press, 1988).

62. T. R. Kirkpatrick and P. G. Wolynes, “Connections Between some Kinetic and Equilibrium Theories of the Glass Transition,” Phys. Rev. A 35(7):3072-3080, (1987).

63. R. E. Cline, Jr. and P. G. Wolynes, “Stochastic Dynamic Models of Curve Crossing Phenomena in Condensed Phases,” J. Chem. Phys. 86(7):3836-3844, (1987).

64. P. G. Wolynes, “Linearized Microscopic Theories of Nonequilibrium Solvation,” J. Chem. Phys. 86(9):5133-5136, (1987).

65. J. D. Morgan and P. G. Wolynes, “Adiabaticity of Electron Transfer at an Electrode,” J. Phys. Chem. 91(4):874-883, (1987).

66. B. A. Mason, K. Hess, R. E. Cline, Jr. and P. G. Wolynes, “A New Technique for the Calculation of Real-Time Path Integrals and Applications to Electron Transport,” Superlattices and Microstructures 3(4):421-428, (1987).

67. R. W. Hall and P. G. Wolynes, “The Aperiodic Crystal Picture and Free Energy Barriers in Glasses,” J. Chem. Phys. 86(5):2943-2948, (1987).

68. A. Kuki and P. G. Wolynes, “Electron Tunneling Paths in Proteins,” Science 236:1647-1652, (1987).

69. J. D. Bryngelson and P. G. Wolynes, “Spin Glasses and the Statistical Mechanics of Protein Folding,” Proc. Natl. Acad. Sci. USA 84:7524-7528, (1987).

70. D. E. Logan and P. G. Wolynes, “Dephasing and Anderson Localization in Topologically Disordered Systems,” Phys. Rev. B 36(8):4135-4147, (1987).

71. P. G. Wolynes, “Imaginary Time Path Integral Monte Carlo Route to Rate Coefficients for Nonadiabatic Barrier Crossing,” J. Chem. Phys. 87(11):6559-6561, (1987).

72. T. R. Kirkpatrick and P. G. Wolynes, “Stable and Metastable States of Mean-Field Potts and Structural Glasses,” Phys. Rev. B 36(16):8552-8564, (1987).

73. D. E. Logan and P. G. Wolynes, “Localizability and Dephasing of Dipolar Excitons in Topologically Disordered Systems,” J. Chem. Phys. 87(12):7199-7207, (1987).

74. J. D. Morgan and P. G. Wolynes, “The Supersymmetric Diffusional Influence Functional: General Theory,” J. Chem. Phys. 88(12):7781-7790, (1988).

75. R. E. Cline, Jr. and P. G. Wolynes, “Monte Carlo Methods for Real-Time Quantum Dynamics of Dissipative Systems,” J. Chem. Phys. 88(7);4334-4350, (1988).

76. C. Zheng, C. Wong, J. A. McCammon and P. G. Wolynes, “Quantum Simulation of Ferrocytochrome c,” Nature 334(6184):726-728, (1988).

77. J. E. Mertz and P. G. Wolynes, “Self-Consistent Phonon Theories of One- and Two-Component Quasicrystals,” Phys. Rev. B, submitted for publication.

78. P. G. Wolynes, “Aperiodic Crystals: Biology, Chemistry and Physics in a Fugue with Stretto,” in Proceedings of the International Symposium on Frontiers in Science (Hans Frauenfelder Festschrift), S. Chan and P. G. DeBrunner, Editors (Am. Inst. Physics, 1989).

79. José Nelson Onuchic and P. G. Wolynes, “Classical and Quantum Pictures of Reaction Dynamics in Condensed Matter: Resonances, Dephasing and All That,” J. Phys. Chem. 92:6495-6503, (1988).

80. P. G. Wolynes, Book Review: “Dynamics of Proteins and Nucleic Acids,” Physics Today 105, September, 1988.

81. I. Ohmine, H. Tanaka and P. G. Wolynes, “Large Local Energy Fluctuations in Water; (II) Cooperative Motions and Fluctuations,” J. Chem. Phys. 89(9):5852-5860, (1988).

82. P. G. Wolynes, “Chemical Reaction Dynamics in Complex Molecular Systems,” in Complex Systems, Santa Fe Institute Studies in the Sciences of Complexity, Daniel Stein, Editor (Addison-Wesley, 1989).

83. C. Zheng, C. F. Wong, J. A. McCammon and P. G. Wolynes, “Classical and Quantum Aspects of Ferrocytochrome c,” Chem. Scripta 29A:171-179, (1989).

84. C. Zheng, J. A. McCammon and P. G. Wolynes, “Quantum Simulation of Nuclear Rearrangement in Electron Transfer Reactions,” Proc. Natl. Acad. Sci. USA 86:6441-6444, (1989).

85. J. D. Bryngelson and P. G. Wolynes, “Intermediates and Barrier Crossing in a Random Energy Model (with Applications to Protein Folding),” (R. Zwanzig Special Issue) J. Phys. Chem. 93:6902-6915, (1989).

86. M. S. Friedrichs and P. G. Wolynes, “Genetic Algorithms for Model Biomolecular Optimization Problems,” J. Theor. Biol., submitted for publication.

87. T. R. Kirkpatrick, D. Thirumalai and P. G. Wolynes, “Scaling Concepts for the Dynamics of Viscous Liquids Near an Ideal Glassy State,” Phys. Rev. A 40(2):1045-1054, (1989).

88. M. S. Friedrichs and P. G. Wolynes, “Toward Protein Tertiary Structure Recognition by Means of Associative Memory Hamiltonians,” Science 246:371-373, (1989).

89. D. A. Evensky, R. T. Scalletar and P. G. Wolynes, “Localization and Dephasing Effects in a Time Dependent Anderson Hamiltonian,” (H. Drickamer Special Issue) J. Phys. Chem. 94(3):1149-1154, (1990).

90. J. D. Bryngelson and P. G. Wolynes, “A Simple Statistical Field Theory of Heteropolymer Collapse with Application to Protein Folding,” Biopolymers 30:177-188, (1990).

91. Peter G. Wolynes, “Spin Glass Ideas and the Protein Folding Problems,” in Spin Glasses and Biology, Daniel Stein, Editor (World Scientific Press, 1992) p. 225.

92. D. E. Logan and P. G. Wolynes, “Quantum Localization and Energy Flow in Many-dimensional Fermi Resonant Systems,” J. Chem. Phys. 93(7):4994-5012, (1990).

93. M. S. Friedrichs and P. G. Wolynes, “Molecular Dynamics of Associative Memory Hamiltonians for Protein Tertiary Structure Recognition,” Tetrahedron Computer Methodology 3(3,4):175-190, (1990).

94. G. R. Fleming and P. G. Wolynes, “Chemical Dynamics in Solution,” (Special Issue) Physics Today 43:36-43, (1990).

95. M. Sasai and P. G. Wolynes, “Molecular Theory of Associative Memory Hamiltonian Models of Protein Folding,” Phys. Rev. Lett. 65(21):2740-2743, (1990).

96. P. G. Wolynes, “Search and Recognition: Spin Glass Engineering as an Approach to Protein Structure Prediction,” Cargesé Lectures 1990 in Biologically Inspired Physics, L. Peliti, Editor (Plenum Press, New York, 1991) pp. 15-37.

97. C. F. Wong, C. Zheng, J. Shen, J. A. McCammon and P. G. Wolynes, “Cytochrome c: A Molecular Proving Ground for Computer Simulations,” J. Phys. Chem. 97(13):3100-3110, (1993).

98. Y. Tanimura and P. G. Wolynes, “Quantum and Classical Fokker-Planck Equations for a Gaussian-Markovian Noise Bath,” Phys. Rev. A 43(8):4131-4142, (1991).

99. M. Friedrichs, R. Goldstein and P. G. Wolynes, “Generalized Protein Tertiary Structure Recognition using Associative Memory Hamiltonians,” J. Mol. Biol. 222:1013-1034, (1991).

100. C. Zheng, J. A. McCammon and P. G. Wolynes, “Quantum Simulations of Conformation Reorganization in the Electron Transfer Reactions of Tuna Cytochrome c,” Chem. Phys. 158:261-270, (1991).

101. R. Goldstein and P. G. Wolynes, “Protein Tertiary Structure Prediction Using Associative Memory Hamiltonians - A Progress Report,” in AIP Conference Proceedings 239, Advances in Biomolecular Simulations International Conference, Obernai, France, 1991, R. Lavery, J.-L. Rivail and J. Smith, Editors, (American Institute of Physics, New York, 1991) p. 200-209.

102. H. Frauenfelder, S. Sligar and P. G. Wolynes, “The Energy Landscapes and Motions of Proteins,” Science 254:1598-1603, (1991).

103. H. Bohr, R. Goldstein and P. G. Wolynes, “Predicting Surface Structures of Proteins by Neural Networks,” Modelling, Measurement & Control C 31(2):53-63, (1992).

104. H. G. Bohr and P. G. Wolynes, “Protein Folding: A Physical View of Neural Network Approaches,” in Proceedings of Workshop on “Neural Networks: From Biology to High Energy Physics,” O. Benhar, C. Bosio, P. Del Giudice and E. Tabet, editors (ETS Editrice, Pisa, Italy, 1992) p. 261-275.

105. Y. Tanimura and P. G. Wolynes, “The Interplay of Tunneling, Resonance and Dissipation in Quantum Barrier Crossing: A Numerical Study,” J. Chem. Phys. 96(11):8485-8496, (1992).

106. R. Goldstein, Z. Luthey-Schulten and P. G. Wolynes, “Optimal Protein-Folding Codes from Spin-Glass Theory,” Proc. Natl. Acad. Sci. USA 89:4918-4922, (1992).

107. P. G. Wolynes, “Randomness and Complexity in Chemical Physics,” Acc. Chem. Res. 25(11):513-519, (1992).

108. P. G. Wolynes, Book Review: Advances in Chemical Physics, Volume LXXVII, I. Prigogine and S. A. Rice, Editors (John Wiley & Sons, New York, 1990).

109. P. G. Wolynes, “Will Computer Design Become a Matter of Evolution?” Computers in Physics 6(3):296, (1992).

110. S. Schofield and P. G. Wolynes, “A Scaling Perspective on Quantum Energy Flow in Molecules,” J. Chem. Phys. 98(2):1123-1131, (1993).

111. J. Onuchic and P. G. Wolynes, “Energy Landscapes, Glass Transitions and Chemical Reaction Dynamics in Biomolecular or Solvent Environments,” J. Chem. Phys. 98(3):2218-2224, (1993).

112. S. A. Schofield and P. G. Wolynes, A. C. Gentile, “Non-RRKM Dynamics and the Statistics of Reaction Rates in Chaotic Systems,” J. Chem. Phys. 98(10):7898-7902, (1993)

113. R. C. Wade, H. Bohr and P. G. Wolynes, “Prediction of Water Binding Sites on Proteins by Neural Networks,” J. Am. Chem. Soc. 114(21):8284-8285, (1992).

114. M. Sasai and P. G. Wolynes, “Unified Theory of Collapse, Folding and Glass Transitions in Associative-Memory Hamiltonian Models of Proteins,” Phys. Rev. A 46(12):7979-7997, (1992).

115. R. A. Goldstein, Z. A. Luthey-Schulten and P. G. Wolynes, “Protein Tertiary Structure Recognition Using Optimized Hamiltonians with Local Interactions,” Proc. Natl. Acad. Sci. USA 89:9029-9033, (1992).

116. H. Bohr and P. G. Wolynes, “Initial Events of Protein Folding From an Information- Processing Viewpoint,” Phys. Rev. A 46(8):5242-5248, (1992).

117. M. B. Weissman and P. G. Wolynes, “Hopfield Models and Spin-Density Waves in Metallic Spin Glasses,” Phys. Rev. B 46(0):14209-14212, (1992).

118. J. Irwin, H. Bohr, K. Mochizuki and P. G. Wolynes, “Classification and Prediction of Protein Side Chains by Neural Network Techniques,” J. of Neural Systems 3:177, (1993).

119. D. A. Evensky and P. G. Wolynes, “Transport of Dipolar Excitons in Disordered Systems,” Chem. Phys. Lett. 209(1,2):185-189, (1993).

120. J. Wang and P. G. Wolynes, “Passage Through Fluctuating Geometrical Bottlenecks: The General Gaussian Fluctuating Case,” Chem. Phys. Lett. 212(5):427-433, (1993).

121. R. A. Goldstein, Z. Luthey-Schulten and P. G. Wolynes, “The Statistical Mechanical Basis of Sequence Alignment Algorithms for Protein Structure Recognition,” in New Developments in Theoretical Studies of Proteins, Advanced Series in Physical Chemistry, Vol. 7, Ron Elber, editor, (World Scientific, Singapore, 1996) p. 359-388.

122. J. Wang and P. G. Wolynes, “Survival Paths for Reaction Dynamics in Fluctuating Environments,” Chem. Phys. 180:141-156, (1994).

123. R. A. Goldstein, J. A. Katzenellenbogen, Z. A. Luthey-Schulten, D. A. Seielstad and P. G. Wolynes, “Three-Dimensional Model for the Hormone Binding Domains of Steroid Receptors,” Proc. Natl. Acad. Sci. USA 90:9949-9953, (1993).

124. S. A. Schofield and P. G. Wolynes, “Quantum Dynamics and Microcanonical Rate Theory,” J. Chem. Phys. 100(1):350-356, (1994).

125. R. A. Goldstein, Z. Luthey-Schulten and P. G. Wolynes, “Protein Tertiary Structure Recognition Using Optimized Associative Memory Hamiltonians,” in Proc. 26th Hawaii International Conference on System Sciences, T. N. Mudge, V. Milutinovic and L. Hunter, Editors, (IEEE Computer Society Press, 1993) pp. 699-707.

126. R. A. Goldstein, Z. Luthey-Schulten and P. G. Wolynes, “A Bayesian Approach to Sequence Alignment Algorithms for Protein Structure Recognition,” in Proc. 27th Hawaii International Conference on System Sciences, Larry Hunter, editor (IEEE Computer Society Press, Los Alamitos, California, 1994), pp. 306-315.

127. H. Frauenfelder and Peter G. Wolynes, “Biomolecules: Where the Physics of Complexity and Simplicity Meet,” Physics Today 47:58-64, (1994).

128. S. A. Schofield and P. G. Wolynes, “Rate Theory and Non-RRKM Quantum Dynamics Described by Local Random Matrix Models,” Chem. Phys. Letts. 217(5,6):497-502, (1994).

129. S. A. Schofield A. C. Gentile and P. G. Wolynes, “The Statistics of Reaction Rates in Quantum Chaotic Systems Described by Local Random Matrix Models,” in Fluctuations and Order: The New Synthesis, M. M Millonas, Editor, (Springer-Verlag, 1994).

130. A. Caliri, H. Bohr and P. G. Wolynes, “Two-Dimensional Chain Folding-Random Energy Interaction,” Phys. Letts. A 183(4):327-331, (1993).

131. K. Gulukota and P. G. Wolynes, “Statistical Mechanics of Kinetic Proof-Reading in Protein Folding In Vivo,” Proc. Natl. Acad. Sci. USA 91:9292-9296, (1994).

132. S. A. Schofield and P. G. Wolynes, “Rate Theory and Quantum Energy Flow in Molecules: Modeling the Effects of Anisotropic Diffusion and of Dephasing,” (Stuart A. Rice Special Issue), J. Phys. Chem. 99(9):2753-2763, (1995).

133. H. Bohr, J. Wang and P. G. Wolynes, “Growth of Domains in Distance Geometry through Protein Folding,” in Protein Structure by Distance Analysis, H. Bohr and S. Brunak, editors, (IOS Press, Amsterdam, 1994) pp. 98-109.

134. R. A. Goldstein, Z. Luthey-Schulten and P. G. Wolynes, “Optimized Energy Functions for Tertiary Structure Prediction and Recognition,” in Protein Structure by Distance Analysis, H. Bohr and S. Brunak, editors, (IOS Press, Amsterdam, 1994) pp. 135-144.

135. J. Bryngelson, J. Onuchic, N. Socci and P. G. Wolynes, “Funnels, Pathways, and the Energy Landscape of Protein Folding: A Synthesis,” Proteins: Structure, Function, and Genetics 21:167-195, (1995).

136. Z. Luthey-Schulten, B. E. Ramirez and P. G. Wolynes, “Helix-Coil, Liquid Crystal and Spin Glass Transitions of a Collapsed Heteropolymer,” J. Phys. Chem. 99(7):2177-2185, (1995).

137. J. G. Saven, J. Wang and P. G. Wolynes, “Kinetics of Protein Folding: The Dynamics of Globally Connected Rough Energy Landscapes with Biases,” J. Chem. Phys. 101(12):11037-11043, (1994).

138. A. R. Panchenko, J. Wang, G. U. Nienhaus, P. G. Wolynes, “Analysis of Ligand Binding to Heme Proteins Using a Fluctuating Path Description,” J. Phys. Chem. 99(22):9278-9282, (1995).

139. J. Wang and P. G. Wolynes, “Intermittency of Single Molecule Reaction Dynamics in Fluctuating Environments,” Phys. Rev. Lett. 74(21):4317-4320, (1995).

140. S. A. Schofield, P. G. Wolynes and R. E. Wyatt, “Computational Study of Many-Dimensional Quantum Energy Flow: From Action Diffusion to Localization,”

Phys. Rev. Lett., 74(19):3720-3723, (1995).

141. J. N. Onuchic, P. G. Wolynes, Z. Luthey-Schulten and N. D. Socci, “Toward an Outline of the Topography of a Realistic Protein-Folding Funnel,”

Proc. Natl. Acad. Sci. USA 92:3626-3630, (1995).

142. S. A. Schofield and P. G. Wolynes, “Picturing Quantized Intramolecular Vibrational Energy Flow: Action Diffusion, Localization, and Scaling,” inDynamics of Molecules and Chemical Reactions,

R. E. Wyatt and J. Z. H. Zhang, editors (Marcel Dekker, New York, 1996) pp. 123-149.

143. P. G. Wolynes, J. N. Onuchic and D. Thirumalai, “Navigating the Folding Routes,” Science, 267:1619-1620, (1995).

144. P. G. Wolynes, “Biomolecular Folding in Vacuo!!!(?),” Commentary, Proc. Natl. Acad. Sci. USA 92:2426-2427, (1995).

145. P. G. Wolynes, “Three Paradoxes of Protein Folding,” in Proceedings on Symposium on Protein Folds: A Distance-Based Approach, H. Bohr, S. Brunak, editors, (CRC Press, Boca Raton, 1995) pp. 3-17.

146. J. Wang and P. G. Wolynes, “Instantons and the Fluctuating Path Description of Reactions in Complex Environments,” (H. Friedman Special Issue) J. Phys. Chem. 100(4):1129-1136, (1996).

147. S. A. Schofield, R. E. Wyatt and P. G. Wolynes, “A Computational Study of Many-Dimensional Quantum Energy Flow and Localization: Spectra and Dynamics,” in Proceedings of 7th International Conference of Time Resolved Spectroscopy, Santa Fe, New Mexico, June 11-16, 1995 (Los Alamos National Laboratory, 1995) in press.

148. S. Okazaki, J. Wang, S. A. Schofield and P. G. Wolynes, “Quantum Twinkling: Statistics, Coherence and the High Order Moments of Probability Amplitudes for Systems Coupled to Quantum Baths,”

Chem. Phys. 222:175-176, (1997).

149. A. R. Panchenko, Z. Luthey-Schulten and P. G. Wolynes, “Foldons, Protein Structural Modules and Exons,” Proc. Natl. Acad. Sci. USA 93:2008-2013, (1996).

150. C. Zheng, V. Makarov and P. G. Wolynes, “Statistical Survey of Transition States and Conformational Substates of the Sperm Whale Myoglobin-CO Reaction System,”

J. Am. Chem. Soc. 118(12):2818-2824, (1996).

151. P. G. Wolynes, “The Basics of Protein Folding Physics,” in Proceedings of the NATO ASI on Physics of Biomaterials: Fluctuations, Selfassembly and Evolution, T. Riste,

ed., (Kluwer Academic Publishers, The Netherlands, 1996) pp. 235-248.

152. Y. Dakhnovskii, V. Lubchenko and P. G. Wolynes, “’False Tunneling’ and Multirelaxation Time Nonexponential Kinetics of Electron Transfer in Polar Glasses,”

J. Chem. Phys. 104(5):1875-1885, (1996).

153. J. Saven and P. G. Wolynes, “Local Conformational Signals and the Statistical Thermodynamics of Collapsed Helical Proteins,” J. Mol. Biol. 257:199-216, (1996).

154. D. M. Leitner and P. G. Wolynes, “Many-dimensional Quantum Energy Flow at Low Energy,” Phys. Rev. Letts. 76(2):216-219, (1996).